Package: AGHmatrix 2.1.5

AGHmatrix: Relationship Matrices for Diploid and Autopolyploid Species

Computation of A (pedigree), G (genomic-base), and H (A corrected by G) relationship matrices for diploid and autopolyploid species. Several methods are implemented considering additive and non-additive models.

Authors:Rodrigo Amadeu [aut, cre], Luis Ferrao [aut, ctb], Catherine Cellon [ctb], Leticia Lara [ctb], Marcio Resende [ctb], Ivone Oliveira [ctb], Patricio Munoz [ctb], Augusto Garcia [ctb]

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AGHmatrix.pdf |AGHmatrix.html✨
AGHmatrix/json (API)

# Install 'AGHmatrix' in R:
install.packages('AGHmatrix', repos = c('https://rramadeu.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/rramadeu/aghmatrix/issues

Datasets:
  • ped.mrode - Pedigree Data
  • ped.sol - Pedigree data for autopolyploid examples
  • snp.pine - Molecular data for diploid examples
  • snp.sol - Molecular data for autopolyploid examples

On CRAN:

Conda:

7.80 score 11 stars 2 packages 102 scripts 1.9k downloads 11 mentions 10 exports 3 dependencies

Last updated 4 months agofrom:0034868d23. Checks:9 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 07 2025
R-4.5-winOKMar 07 2025
R-4.5-macOKMar 07 2025
R-4.5-linuxOKMar 07 2025
R-4.4-winOKMar 07 2025
R-4.4-macOKMar 07 2025
R-4.4-linuxOKMar 07 2025
R-4.3-winOKMar 07 2025
R-4.3-macOKMar 07 2025

Exports:AmatrixAmatrixPolyCrossdatatreatexpandAmatrixfilterpedigreeformatmatrixGmatrixHmatrixMcheckmissingdata

Dependencies:latticeMatrixzoo

AGHmatrix Tutorial

Rodrigo Amadeu

Rendered fromTutorial_AGHmatrix.Rmdusingknitr::rmarkdownon Mar 07 2025.

Last update: 2023-08-16
Started: 2017-07-19